PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.342870.7
Common NameCsa_3G866510, LOC101216825
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 851aa    MW: 93831.7 Da    PI: 4.9997
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.342870.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-2451152199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        + ++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   +++
  Cucsa.342870.7  51 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytM-QPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDE 141
                     99*********************999*****954.4444.38************************************************..457 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++v+r+
  Cucsa.342870.7 142 KSQLLIGVRRA 152
                     7778****997 PP

2Auxin_resp113.71.7e-37177260183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++k ++ +++s+GmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  Cucsa.342870.7 177 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYgTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 260
                     79*********************************99*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-4738180IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-4244165IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-2250151No hitNo description
SMARTSM010191.7E-2451153IPR003340B3 DNA binding domain
PfamPF023629.4E-2251152IPR003340B3 DNA binding domain
PROSITE profilePS5086313.08451153IPR003340B3 DNA binding domain
PfamPF065071.6E-32177260IPR010525Auxin response factor
PROSITE profilePS5174525.592736820IPR000270PB1 domain
PfamPF023091.1E-9737823IPR033389AUX/IAA domain
SuperFamilySSF542772.99E-9738815No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MCQVQNVTLH ADKDSDEIYA QMSLQPVNSE KDVFLVPDFG LRPSKHPNEF FCKTLTASDT  60
STHGGFSVPR RAAEKLFPPL DYTMQPPTQE LIVRDLHDNT WTFRHIYRGQ PKRHLLTTGW  120
SLFVGAKRLR AGDSVLFIRD EKSQLLIGVR RANRQQTTLP SSVLSADSMH IGVLAAAAHA  180
AANRSPFTIF YNPRACPSEF VIPLAKYRKC VYGTQLSAGM RFGMMFETEE SGKRRYMGTI  240
VGISDLDPLR WPGSKWRNLQ VEWDEPGCCD KQNRVSSWEI ETPESLFIFP SLTSGLKRPL  300
HGGFLGETDW GSLVKRPMLR VPENIRGDLS YAPTLCSEPL MKMLLRPQMV NLNGTTLQQD  360
STNNLVKIQD MKDMQNPKMQ QLIPTETASP GNQNQHHPGP AQSDPINPNS SPKANVPGKV  420
QTSVAIESEA PTAADGDKAK YDRDLSASTN QSNPLPPVGG CAEEKLTSNE MNMQTLVNQL  480
SFVNQNQIPM QLQSVSWPMQ PQLESLIQHP QPIDMPQPEY TNSNGLISSL DGDGCLINPS  540
CLPLPGVMRS PGNLSMLGLQ DSSTVFPEVL NFPLPSTGQD MWDPLNNIRF SSQTNHLISF  600
SHADASNLNC MANANIMRDV SDESNNQSGI YSCSNLEMSN GGSTLVDHAV SSTILDDYCT  660
LKDADFPHPS DCLAGNFSSS QDVQSQITSA SLGDSQAFSR QEFHDNSAGT SSCNVDFDEG  720
SLLQNGSWKQ VVPPLRTYTK VQKAGSVGRS IDVTSFKNYD ELCSAIECMF GLEGLLNDPR  780
GSGWKLVYVD YENDVLLIGD DPWEEFVSCV RCIRILSPSE VQQMSEEGMK LLNSAMMQGI  840
NCPMSEGGRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.01285107392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3234190.0KU323419.1 UNVERIFIED: Trichosanthes dioica clone TdARF_27 auxin response factor 5-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652441.10.0PREDICTED: auxin response factor 5 isoform X2
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A0A0LE690.0A0A0A0LE69_CUCSA; Auxin response factor
STRINGVIT_18s0001g13930.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]